Qui Gon, as he was close to almost rebelling against the order, was probably the only one who understood that the kid needed his mother

Qui Gon wasn’t in rebellion against the Jedi. Just the opposite, he was all the way into the Kool aid, chasing fantastic prophecies about Jedi Messiah.

His final wish wasn’t to see Anakin grow up with his mom, but to see Balance Return to The Force (a problem that’s never properly illustrated in the movies, just mentioned as a philosophical hang up).

Maybe that’s why the Emperor send Maul to kill Qui Gon, he needed Anakin oppressed by the order so he can turn to the dark side.

Maul wasn’t sent to kill Qui Gon specifically, just to eliminate the Jedi interfering with the plot to spark civil war.

Anakin was one more useful idiot for Palatine to exploit. Only useful until he couldn’t kill that last lingering Jedi.